Similar Software Tools

Interactive skeleton tracing and segmentation

• TrakEM2

• Knossos

• NeuTu

• Reconstruct

• Raveler (*)

• Viking (*)

• Program Elegance (*)

• SSECRETT and Neurotrace (*)

• NeuroStruct (*)

• ESPina (*)

These are all desktop-based tools. (*) are not directly available for download.

Web-based image viewer

• Mouse Brain Architecture Viewer

• Biological Image Viewer Kitware

• iConnectome

• Virtual Fly Brain

• WebImage Browser

• IIPIImage

• Djatoka

• OpenLayers

• JCB Data Viewer

iPad Apps

• WholeSlide

Segmentation Software

• Ilastik (and preview integration with CATMAID)

• Fiji